3D structure

PDB id
7YLA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 50S-HflX complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.52 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7YLA_011 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.0763
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

7YLA|1|I|G|2643
7YLA|1|I|G|2644
7YLA|1|I|G|2645
7YLA|1|I|C|2646
*
7YLA|1|I|G|2674
7YLA|1|I|A|2675
7YLA|1|I|C|2676
*
7YLA|1|I|G|2731
7YLA|1|I|G|2732
7YLA|1|I|A|2733
7YLA|1|I|A|2734
7YLA|1|I|G|2735
*
7YLA|1|I|U|2769
7YLA|1|I|G|2770
7YLA|1|I|C|2771

Current chains

Chain I
Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L
50S ribosomal protein L3
Chain R
50S ribosomal protein L13
Chain S
50S ribosomal protein L14

Coloring options:


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