J4_7YLA_011

3D structure

PDB id

7YLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-HflX complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7YLA_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0763

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7YLA|1|I|G|2643
7YLA|1|I|G|2644
7YLA|1|I|G|2645
7YLA|1|I|C|2646
*
7YLA|1|I|G|2674
7YLA|1|I|A|2675
7YLA|1|I|C|2676
*
7YLA|1|I|G|2731
7YLA|1|I|G|2732
7YLA|1|I|A|2733
7YLA|1|I|A|2734
7YLA|1|I|G|2735
*
7YLA|1|I|U|2769
7YLA|1|I|G|2770
7YLA|1|I|C|2771

Current chains

Chain I

Escherichia coli strain K-12 substr. MG1655_TMP32XR1 chromosome, complete genome

Nearby chains

Chain L

50S ribosomal protein L3

Chain R

50S ribosomal protein L13

Chain S

50S ribosomal protein L14