J4_7Z20_005

3D structure

PDB id

7Z20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7Z20|1|b|G|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7Z20_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0658

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7Z20|1|b|G|1309
7Z20|1|b|G|1310
7Z20|1|b|U|1311
7Z20|1|b|U|1312
7Z20|1|b|C|1313
*
7Z20|1|b|G|1337
7Z20|1|b|G|1338
7Z20|1|b|U|1339
7Z20|1|b|G|1340
7Z20|1|b|A|1341
7Z20|1|b|G|1342
*
7Z20|1|b|C|1403
7Z20|1|b|U|1404
*
7Z20|1|b|A|1596
7Z20|1|b|A|1597
7Z20|1|b|U|1598
7Z20|1|b|C|1599
7Z20|1|b|G|1600
7Z20|1|b|U|1601
7Z20|1|b|A|1602
7Z20|1|b|C|1603

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23