J4_7Z20_009
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7Z20|1|b|U|1970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7Z20_009 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.0911
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7Z20|1|b|C|1832
7Z20|1|b|U|1833
7Z20|1|b|G|1834
*
7Z20|1|b|C|1904
7Z20|1|b|G|1905
*
7Z20|1|b|C|1923
7Z20|1|b|C|1924
7Z20|1|b|U|1925
7Z20|1|b|A|1926
7Z20|1|b|A|1927
7Z20|1|b|G|1928
7Z20|1|b|G|1929
7Z20|1|b|U|1930
7Z20|1|b|A|1931
7Z20|1|b|G|1932
*
7Z20|1|b|C|1966
7Z20|1|b|G|1967
7Z20|1|b|A|1968
7Z20|1|b|A|1969
7Z20|1|b|U|1970
7Z20|1|b|G|1971
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
- Chain v
- Transfer RNA; tRNA
Coloring options: