J4_7ZAG_001

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAGUAACAC*GGC*GUAC*GG

Length

18 nucleotides

Bulged bases

7ZAG|1|2|C|117

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|111
7ZAG|1|2|A|112
7ZAG|1|2|G|113
7ZAG|1|2|U|114
7ZAG|1|2|A|115
7ZAG|1|2|A|116
7ZAG|1|2|C|117
7ZAG|1|2|A|118
7ZAG|1|2|C|119
*
7ZAG|1|2|G|247
7ZAG|1|2|G|248
7ZAG|1|2|C|249
*
7ZAG|1|2|G|295
7ZAG|1|2|U|296
7ZAG|1|2|A|297
7ZAG|1|2|C|298
*
7ZAG|1|2|G|320
7ZAG|1|2|G|321

Current chains

Chain 2

rRNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e

Chain N

30S ribosomal protein S12

Chain R

30S ribosomal protein S17