J4_7ZAG_005
3D structure
- PDB id
- 7ZAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7ZAG|1|4|4SU|8, 7ZAG|1|4|U|47, 7ZAG|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZAG_005 not in the Motif Atlas
- Homologous match to J4_1QU2_001
- Geometric discrepancy: 0.2073
- The information below is about J4_1QU2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7ZAG|1|4|G|7
7ZAG|1|4|4SU|8
7ZAG|1|4|G|9
7ZAG|1|4|G|10
*
7ZAG|1|4|C|25
7ZAG|1|4|G|26
7ZAG|1|4|U|27
*
7ZAG|1|4|A|43
7ZAG|1|4|A|44
7ZAG|1|4|G|45
7ZAG|1|4|A|46
7ZAG|1|4|U|47
7ZAG|1|4|C|48
7ZAG|1|4|G|49
*
7ZAG|1|4|C|65
7ZAG|1|4|C|66
Current chains
- Chain 4
- Met-tRNAiMET
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S13
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