J4_7ZAH_004
3D structure
- PDB id
- 7ZAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an archaeal aIF5B bound to the ssu translation initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- G(4SU)GG*CGUC*GAAGAUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 7ZAH|1|4|4SU|8, 7ZAH|1|4|U|47, 7ZAH|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZAH_004 not in the Motif Atlas
- Homologous match to J4_1QF6_001
- Geometric discrepancy: 0.2828
- The information below is about J4_1QF6_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_51436.1
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7ZAH|1|4|G|7
7ZAH|1|4|4SU|8
7ZAH|1|4|G|9
7ZAH|1|4|G|10
*
7ZAH|1|4|C|25
7ZAH|1|4|G|26
7ZAH|1|4|U|27
7ZAH|1|4|C|28
*
7ZAH|1|4|G|42
7ZAH|1|4|A|43
7ZAH|1|4|A|44
7ZAH|1|4|G|45
7ZAH|1|4|A|46
7ZAH|1|4|U|47
7ZAH|1|4|C|48
7ZAH|1|4|G|49
*
7ZAH|1|4|C|65
7ZAH|1|4|C|66
Current chains
- Chain 4
- tRNA-MET
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S13
- Chain T
- 30S ribosomal protein S19
Coloring options: