J4_7ZJW_003

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CC*GAGGGAG*UGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7ZJW|1|L5|G|859, 7ZJW|1|L5|U|873, 7ZJW|1|L5|C|1224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|C|706
7ZJW|1|L5|C|707
*
7ZJW|1|L5|G|855
7ZJW|1|L5|A|856
7ZJW|1|L5|G|857
7ZJW|1|L5|G|858
7ZJW|1|L5|G|859
7ZJW|1|L5|A|860
7ZJW|1|L5|G|861
*
7ZJW|1|L5|U|871
7ZJW|1|L5|G|872
7ZJW|1|L5|U|873
7ZJW|1|L5|C|874
7ZJW|1|L5|G|875
7ZJW|1|L5|C|876
7ZJW|1|L5|C|877
7ZJW|1|L5|G|878
*
7ZJW|1|L5|C|1222
7ZJW|1|L5|A|1223
7ZJW|1|L5|C|1224
7ZJW|1|L5|G|1225
7ZJW|1|L5|G|1226
7ZJW|1|L5|G|1227
7ZJW|1|L5|G|1228

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L4

Chain LH

60S ribosomal protein L6

Chain LI

60S ribosomal Protein uL30

Chain Lh

60S ribosomal protein eL32