J4_7ZJW_008
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAUGG*CGUUC*GAAGGG*CAGCCGA(PSU)
- Length
- 25 nucleotides
- Bulged bases
- 7ZJW|1|L5|A|2315, 7ZJW|1|L5|G|2318
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|L5|A|2294
7ZJW|1|L5|G|2295
7ZJW|1|L5|A|2296
7ZJW|1|L5|U|2297
7ZJW|1|L5|G|2298
7ZJW|1|L5|G|2299
*
7ZJW|1|L5|C|2308
7ZJW|1|L5|G|2309
7ZJW|1|L5|U|2310
7ZJW|1|L5|U|2311
7ZJW|1|L5|C|2312
*
7ZJW|1|L5|G|2314
7ZJW|1|L5|A|2315
7ZJW|1|L5|A|2316
7ZJW|1|L5|G|2317
7ZJW|1|L5|G|2318
7ZJW|1|L5|G|2319
*
7ZJW|1|L5|C|2344
7ZJW|1|L5|A|2345
7ZJW|1|L5|G|2346
7ZJW|1|L5|C|2347
7ZJW|1|L5|C|2348
7ZJW|1|L5|G|2349
7ZJW|1|L5|A|2350
7ZJW|1|L5|PSU|2351
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein uL2
- Chain LJ
- 60S ribosomal protein eL8
- Chain LQ
- 60S ribosomal protein L15
- Chain La
- 60S ribosomal protein uL23
- Chain Lm
- 60S ribosomal protein L37
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