J4_7ZJW_009

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7ZJW|1|L5|A|2539

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|G|2461
7ZJW|1|L5|G|2462
*
7ZJW|1|L5|U|2480
7ZJW|1|L5|G|2481
7ZJW|1|L5|U|2482
7ZJW|1|L5|G|2483
7ZJW|1|L5|A|2484
7ZJW|1|L5|A|2485
*
7ZJW|1|L5|U|2535
7ZJW|1|L5|G|2536
7ZJW|1|L5|G|2537
7ZJW|1|L5|A|2538
7ZJW|1|L5|A|2539
7ZJW|1|L5|A|2540
7ZJW|1|L5|G|2541
*
7ZJW|1|L5|U|2561
7ZJW|1|L5|C|2562

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

60S ribosomal protein L19

Chain LX

60S ribosomal protein eL22

Chain Lj

60S ribosomal protein L34

Chain Ln

60S ribosomal protein eL38