J4_7ZJW_011
3D structure
- PDB id
- 7ZJW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome as it decodes the Sec-UGA codon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7ZJW|1|L5|U|3550
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJW_011 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0838
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJW|1|L5|C|3428
7ZJW|1|L5|U|3429
7ZJW|1|L5|G|3430
*
7ZJW|1|L5|C|3484
7ZJW|1|L5|G|3485
*
7ZJW|1|L5|C|3503
7ZJW|1|L5|U|3504
7ZJW|1|L5|U|3505
7ZJW|1|L5|A|3506
7ZJW|1|L5|A|3507
7ZJW|1|L5|G|3508
7ZJW|1|L5|G|3509
7ZJW|1|L5|U|3510
7ZJW|1|L5|A|3511
7ZJW|1|L5|G|3512
*
7ZJW|1|L5|U|3546
7ZJW|1|L5|G|3547
7ZJW|1|L5|A|3548
7ZJW|1|L5|A|3549
7ZJW|1|L5|U|3550
7ZJW|1|L5|G|3551
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain I
- Cripavirus internal ribosome entry site (IRES); CrPV IRES
- Chain LD
- 60S ribosomal protein uL2
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sl
- 60S ribosomal protein L41
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