J4_7ZJW_012

3D structure

PDB id

7ZJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome as it decodes the Sec-UGA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAG*UUG*CC*GGG

Length

13 nucleotides

Bulged bases

7ZJW|1|L5|A|3980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJW|1|L5|C|3977
7ZJW|1|L5|U|3978
7ZJW|1|L5|A|3979
7ZJW|1|L5|A|3980
7ZJW|1|L5|G|3981
*
7ZJW|1|L5|U|4035
7ZJW|1|L5|U|4036
7ZJW|1|L5|G|4037
*
7ZJW|1|L5|C|4064
7ZJW|1|L5|C|4065
*
7ZJW|1|L5|G|4074
7ZJW|1|L5|G|4075
7ZJW|1|L5|G|4076

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

Ribosomal_L18_c domain-containing protein

Chain LW

60S ribosomal protein eL21

Chain Lq

60S ribosomal protein eL42