J4_7ZJX_005

3D structure

PDB id

7ZJX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome programmed with SECIS and SBP2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

7ZJX|1|L5|A|2209, 7ZJX|1|L5|U|2212, 7ZJX|1|L5|U|2671

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZJX|1|L5|OMC|2208
7ZJX|1|L5|A|2209
7ZJX|1|L5|A|2210
7ZJX|1|L5|A|2211
7ZJX|1|L5|U|2212
7ZJX|1|L5|A|2213
7ZJX|1|L5|U|2214
*
7ZJX|1|L5|A|2232
7ZJX|1|L5|G|2233
7ZJX|1|L5|G|2234
*
7ZJX|1|L5|OMC|2667
7ZJX|1|L5|A|2668
7ZJX|1|L5|U|2669
7ZJX|1|L5|G|2670
7ZJX|1|L5|U|2671
7ZJX|1|L5|U|2672
*
7ZJX|1|L5|A|3588
7ZJX|1|L5|G|3589

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LS

60S ribosomal protein uL22

Chain LU

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L31