J4_7ZJX_010
3D structure
- PDB id
- 7ZJX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome programmed with SECIS and SBP2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZJX_010 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1938
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZJX|1|L5|G|3366
7ZJX|1|L5|A|3367
7ZJX|1|L5|C|3368
7ZJX|1|L5|PSU|3369
7ZJX|1|L5|G|3370
*
7ZJX|1|L5|C|3382
7ZJX|1|L5|A|3383
7ZJX|1|L5|A|3384
7ZJX|1|L5|A|3385
7ZJX|1|L5|G|3386
*
7ZJX|1|L5|U|3422
7ZJX|1|L5|G|3423
7ZJX|1|L5|A|3424
7ZJX|1|L5|U|3425
7ZJX|1|L5|U|3426
*
7ZJX|1|L5|A|3553
7ZJX|1|L5|PSU|3554
7ZJX|1|L5|G|3555
7ZJX|1|L5|A|3556
7ZJX|1|L5|A2M|3557
7ZJX|1|L5|C|3558
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein uL2
- Chain Lr
- 60S ribosomal protein eL43
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sl
- 60S ribosomal protein L41
Coloring options: