J4_7ZOD_001

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7ZOD|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZOD_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.103

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7ZOD|1|b|C|268
7ZOD|1|b|C|269
*
7ZOD|1|b|G|370
7ZOD|1|b|A|371
7ZOD|1|b|G|372
7ZOD|1|b|U|373
7ZOD|1|b|A|374
7ZOD|1|b|G|375
*
7ZOD|1|b|U|399
7ZOD|1|b|G|400
7ZOD|1|b|A|401
7ZOD|1|b|A|402
7ZOD|1|b|U|403
7ZOD|1|b|A|404
7ZOD|1|b|U|405
7ZOD|1|b|G|406
*
7ZOD|1|b|C|421
7ZOD|1|b|A|422
7ZOD|1|b|A|423
7ZOD|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain h

50S ribosomal protein L9