J4_7ZOD_009

3D structure

PDB id

7ZOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7ZOD|1|b|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZOD_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0879

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7ZOD|1|b|C|1833
7ZOD|1|b|U|1834
7ZOD|1|b|G|1835
*
7ZOD|1|b|C|1905
7ZOD|1|b|G|1906
*
7ZOD|1|b|C|1924
7ZOD|1|b|C|1925
7ZOD|1|b|U|1926
7ZOD|1|b|A|1927
7ZOD|1|b|A|1928
7ZOD|1|b|G|1929
7ZOD|1|b|G|1930
7ZOD|1|b|U|1931
7ZOD|1|b|A|1932
7ZOD|1|b|G|1933
*
7ZOD|1|b|C|1967
7ZOD|1|b|G|1968
7ZOD|1|b|A|1969
7ZOD|1|b|A|1970
7ZOD|1|b|U|1971
7ZOD|1|b|G|1972

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2