J4_7ZP8_002

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZP8_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1537

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7ZP8|1|b|G|297
7ZP8|1|b|G|298
7ZP8|1|b|A|299
7ZP8|1|b|A|300
7ZP8|1|b|G|301
*
7ZP8|1|b|C|316
7ZP8|1|b|G|317
7ZP8|1|b|C|318
7ZP8|1|b|G|319
*
7ZP8|1|b|C|323
7ZP8|1|b|A|324
7ZP8|1|b|G|325
*
7ZP8|1|b|C|337
7ZP8|1|b|G|338
7ZP8|1|b|U|339
7ZP8|1|b|A|340
7ZP8|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24