J4_7ZP8_005

3D structure

PDB id

7ZP8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ZP8|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZP8_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0807

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZP8|1|b|G|1310
7ZP8|1|b|G|1311
7ZP8|1|b|U|1312
7ZP8|1|b|U|1313
7ZP8|1|b|C|1314
*
7ZP8|1|b|G|1338
7ZP8|1|b|G|1339
7ZP8|1|b|U|1340
7ZP8|1|b|G|1341
7ZP8|1|b|A|1342
7ZP8|1|b|G|1343
*
7ZP8|1|b|C|1404
7ZP8|1|b|U|1405
*
7ZP8|1|b|A|1597
7ZP8|1|b|A|1598
7ZP8|1|b|U|1599
7ZP8|1|b|C|1600
7ZP8|1|b|G|1601
7ZP8|1|b|U|1602
7ZP8|1|b|A|1603
7ZP8|1|b|C|1604

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23