J4_7ZPQ_012
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GUGG*CGU*AAGAUUC*GC
- Length
- 16 nucleotides
- Bulged bases
- 7ZPQ|1|6|U|8, 7ZPQ|1|6|U|47, 7ZPQ|1|6|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZPQ_012 not in the Motif Atlas
- Homologous match to J4_6CFJ_015
- Geometric discrepancy: 0.2159
- The information below is about J4_6CFJ_015
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7ZPQ|1|6|G|7
7ZPQ|1|6|U|8
7ZPQ|1|6|G|9
7ZPQ|1|6|G|10
*
7ZPQ|1|6|C|25
7ZPQ|1|6|G|26
7ZPQ|1|6|U|27
*
7ZPQ|1|6|A|43
7ZPQ|1|6|A|44
7ZPQ|1|6|G|45
7ZPQ|1|6|A|46
7ZPQ|1|6|U|47
7ZPQ|1|6|U|48
7ZPQ|1|6|C|49
*
7ZPQ|1|6|G|65
7ZPQ|1|6|C|66
Current chains
- Chain 6
- tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AZ
- 40S ribosomal protein S25
- Chain BI
- RPL10 isoform 1
Coloring options: