3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7ZQ5|1|b|U|653, 7ZQ5|1|b|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZQ5_003 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.5312
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7ZQ5|1|b|C|601
7ZQ5|1|b|A|602
7ZQ5|1|b|A|603
7ZQ5|1|b|G|604
*
7ZQ5|1|b|C|624
7ZQ5|1|b|G|625
7ZQ5|1|b|A|626
7ZQ5|1|b|A|627
7ZQ5|1|b|G|628
*
7ZQ5|1|b|C|635
7ZQ5|1|b|G|636
7ZQ5|1|b|A|637
7ZQ5|1|b|G|638
*
7ZQ5|1|b|C|650
7ZQ5|1|b|G|651
7ZQ5|1|b|U|652
7ZQ5|1|b|U|653
7ZQ5|1|b|A|654
7ZQ5|1|b|A|655
7ZQ5|1|b|G|656

Current chains

Chain b
23S rRNA

Nearby chains

Chain 7
50S ribosomal protein L35
Chain e
50S ribosomal protein L4
Chain l
50S ribosomal protein L15

Coloring options:


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