J4_7ZQ5_005

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ZQ5|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZQ5_005 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0739

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|G|1310
7ZQ5|1|b|G|1311
7ZQ5|1|b|U|1312
7ZQ5|1|b|U|1313
7ZQ5|1|b|C|1314
*
7ZQ5|1|b|G|1338
7ZQ5|1|b|G|1339
7ZQ5|1|b|U|1340
7ZQ5|1|b|G|1341
7ZQ5|1|b|A|1342
7ZQ5|1|b|G|1343
*
7ZQ5|1|b|C|1404
7ZQ5|1|b|U|1405
*
7ZQ5|1|b|A|1597
7ZQ5|1|b|A|1598
7ZQ5|1|b|U|1599
7ZQ5|1|b|C|1600
7ZQ5|1|b|G|1601
7ZQ5|1|b|U|1602
7ZQ5|1|b|A|1603
7ZQ5|1|b|C|1604

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain t

50S ribosomal protein L23