J4_7ZQ6_003

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZQ6_003 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0569

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7ZQ6|1|b|G|297
7ZQ6|1|b|G|298
7ZQ6|1|b|A|299
7ZQ6|1|b|A|300
7ZQ6|1|b|G|301
*
7ZQ6|1|b|C|316
7ZQ6|1|b|G|317
7ZQ6|1|b|C|318
7ZQ6|1|b|G|319
*
7ZQ6|1|b|C|323
7ZQ6|1|b|A|324
7ZQ6|1|b|G|325
*
7ZQ6|1|b|C|337
7ZQ6|1|b|G|338
7ZQ6|1|b|U|339
7ZQ6|1|b|A|340
7ZQ6|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain u

50S ribosomal protein L24