3D structure

PDB id
7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
7ZQ6|1|b|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZQ6_004 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.5149
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

7ZQ6|1|b|C|601
7ZQ6|1|b|A|602
7ZQ6|1|b|A|603
7ZQ6|1|b|G|604
*
7ZQ6|1|b|C|624
7ZQ6|1|b|G|625
7ZQ6|1|b|A|626
7ZQ6|1|b|A|627
7ZQ6|1|b|G|628
*
7ZQ6|1|b|C|635
7ZQ6|1|b|G|636
7ZQ6|1|b|A|637
7ZQ6|1|b|G|638
*
7ZQ6|1|b|C|650
7ZQ6|1|b|G|651
7ZQ6|1|b|U|652
7ZQ6|1|b|U|653
7ZQ6|1|b|A|654
7ZQ6|1|b|A|655
7ZQ6|1|b|G|656

Current chains

Chain b
23S rRNA

Nearby chains

Chain 7
50S ribosomal protein L35
Chain e
50S ribosomal protein L4
Chain l
50S ribosomal protein L15

Coloring options:


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