J4_7ZRS_002
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7ZRS|1|2|A|623, 7ZRS|1|2|A|1026, 7ZRS|1|2|C|1028, 7ZRS|1|2|U|1029, 7ZRS|1|2|A|1030, 7ZRS|1|2|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZRS_002 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0606
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7ZRS|1|2|A|622
7ZRS|1|2|A|623
7ZRS|1|2|G|624
*
7ZRS|1|2|C|975
7ZRS|1|2|G|976
7ZRS|1|2|A|977
7ZRS|1|2|A|978
7ZRS|1|2|A|979
7ZRS|1|2|G|980
*
7ZRS|1|2|C|1021
7ZRS|1|2|C|1022
7ZRS|1|2|A|1023
7ZRS|1|2|U|1024
7ZRS|1|2|A|1025
7ZRS|1|2|A|1026
7ZRS|1|2|A|1027
7ZRS|1|2|C|1028
7ZRS|1|2|U|1029
7ZRS|1|2|A|1030
7ZRS|1|2|U|1031
7ZRS|1|2|G|1032
*
7ZRS|1|2|U|1103
7ZRS|1|2|U|1104
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL
- 40S ribosomal protein S11-A
- Chain AN
- 40S ribosomal protein S13
- Chain AO
- 40S ribosomal protein S14-B
- Chain AW
- RPS22A isoform 1
- Chain AX
- 40S ribosomal protein S23-A
- Chain Aa
- RPS26B isoform 1
- Chain Bm
- RPL41A isoform 1
- Chain Bo
- 60S ribosomal protein L43-A
Coloring options: