J4_7ZRS_006
3D structure
- PDB id
- 7ZRS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7ZRS|1|5|U|1524
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZRS_006 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0486
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7ZRS|1|5|G|1493
7ZRS|1|5|G|1494
7ZRS|1|5|U|1495
7ZRS|1|5|U|1496
7ZRS|1|5|C|1497
*
7ZRS|1|5|G|1521
7ZRS|1|5|G|1522
7ZRS|1|5|U|1523
7ZRS|1|5|U|1524
7ZRS|1|5|A|1525
7ZRS|1|5|G|1526
*
7ZRS|1|5|C|1615
7ZRS|1|5|C|1616
*
7ZRS|1|5|G|1830
7ZRS|1|5|G|1831
7ZRS|1|5|U|1832
7ZRS|1|5|C|1833
7ZRS|1|5|G|1834
7ZRS|1|5|U|1835
7ZRS|1|5|A|1836
7ZRS|1|5|C|1837
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BQ
- 60S ribosomal protein L19-A
- Chain BW
- 60S ribosomal protein L25
- Chain Bf
- 60S ribosomal protein L34-A
- Chain Bi
- 60S ribosomal protein L37-A
- Chain Bj
- RPL38 isoform 1
- Chain Bk
- 60S ribosomal protein L39
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