3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAUG*CGUC*GAG*CGUGUG
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZS5_002 not in the Motif Atlas
Homologous match to J4_8P9A_013
Geometric discrepancy: 0.1544
The information below is about J4_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_12410.1
Basepair signature
cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7ZS5|1|1|C|185
7ZS5|1|1|U|186
7ZS5|1|1|A|187
7ZS5|1|1|U|188
7ZS5|1|1|G|189
*
7ZS5|1|1|C|205
7ZS5|1|1|G|206
7ZS5|1|1|U|207
7ZS5|1|1|C|208
*
7ZS5|1|1|G|212
7ZS5|1|1|A|213
7ZS5|1|1|G|214
*
7ZS5|1|1|C|226
7ZS5|1|1|G|227
7ZS5|1|1|U|228
7ZS5|1|1|G|229
7ZS5|1|1|U|230
7ZS5|1|1|G|231

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain BE
60S ribosomal protein L4-A
Chain BZ
60S ribosomal protein L26-A

Coloring options:


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