3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
7ZS5|1|1|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZS5_004 not in the Motif Atlas
Homologous match to J4_8C3A_004
Geometric discrepancy: 0.0795
The information below is about J4_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7ZS5|1|1|G|1492
7ZS5|1|1|G|1493
7ZS5|1|1|U|1494
7ZS5|1|1|U|1495
7ZS5|1|1|C|1496
*
7ZS5|1|1|G|1520
7ZS5|1|1|G|1521
7ZS5|1|1|U|1522
7ZS5|1|1|U|1523
7ZS5|1|1|A|1524
7ZS5|1|1|G|1525
*
7ZS5|1|1|C|1614
7ZS5|1|1|C|1615
*
7ZS5|1|1|G|1829
7ZS5|1|1|G|1830
7ZS5|1|1|U|1831
7ZS5|1|1|C|1832
7ZS5|1|1|G|1833
7ZS5|1|1|U|1834
7ZS5|1|1|A|1835
7ZS5|1|1|C|1836

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain 4
5.8S ribosomal RNA; 5.8S rRNA
Chain BS
60S ribosomal protein L19-A
Chain BY
60S ribosomal protein L25
Chain Bh
60S ribosomal protein L34-A
Chain Bk
60S ribosomal protein L37-A
Chain Bl
60S ribosomal protein L38
Chain Bm
60S ribosomal protein L39

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