J4_7ZS5_011

3D structure

PDB id

7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZS5_011 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.1243

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_07509.2

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

3

Unit IDs

7ZS5|1|1|G|2130
7ZS5|1|1|A|2131
7ZS5|1|1|C|2132
7ZS5|1|1|U|2133
7ZS5|1|1|G|2134
*
7ZS5|1|1|C|2146
7ZS5|1|1|A|2147
7ZS5|1|1|U|2148
7ZS5|1|1|A|2149
7ZS5|1|1|G|2150
*
7ZS5|1|1|U|2186
7ZS5|1|1|G|2187
7ZS5|1|1|A|2188
7ZS5|1|1|U|2189
7ZS5|1|1|U|2190
*
7ZS5|1|1|A|2317
7ZS5|1|1|U|2318
7ZS5|1|1|U|2319
7ZS5|1|1|A|2320
7ZS5|1|1|A|2321
7ZS5|1|1|C|2322

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L43-A

Chain BC

60S ribosomal protein L2-A