3D structure

PDB id
7ZS5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of 60S ribosomal subunit from S. cerevisiae with eIF6 and tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAG*UUGAU*ACC*GUG
Length
16 nucleotides
Bulged bases
7ZS5|1|1|A|2657
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZS5_012 not in the Motif Atlas
Homologous match to J4_8CRE_008
Geometric discrepancy: 0.1714
The information below is about J4_8CRE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_04930.6
Basepair signature
cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
Number of instances in this motif group
7

Unit IDs

7ZS5|1|1|C|2654
7ZS5|1|1|U|2655
7ZS5|1|1|A|2656
7ZS5|1|1|A|2657
7ZS5|1|1|G|2658
*
7ZS5|1|1|U|2712
7ZS5|1|1|U|2713
7ZS5|1|1|G|2714
7ZS5|1|1|A|2715
7ZS5|1|1|U|2716
*
7ZS5|1|1|A|2740
7ZS5|1|1|C|2741
7ZS5|1|1|C|2742
*
7ZS5|1|1|G|2751
7ZS5|1|1|U|2752
7ZS5|1|1|G|2753

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain BA
60S ribosomal protein L42-A
Chain BF
60S ribosomal protein L5
Chain BU
60S ribosomal protein L21-A
Chain Bc
60S ribosomal protein L29

Coloring options:


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