J4_7ZTA_003
3D structure
- PDB id
- 7ZTA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7ZTA|1|16S1|C|576, 7ZTA|1|16S1|A|815, 7ZTA|1|16S1|C|817, 7ZTA|1|16S1|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZTA_003 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0614
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
7ZTA|1|16S1|G|575
7ZTA|1|16S1|C|576
7ZTA|1|16S1|G|577
*
7ZTA|1|16S1|C|764
7ZTA|1|16S1|G|765
7ZTA|1|16S1|A|766
7ZTA|1|16S1|A|767
7ZTA|1|16S1|A|768
7ZTA|1|16S1|G|769
*
7ZTA|1|16S1|C|810
7ZTA|1|16S1|C|811
7ZTA|1|16S1|G|812
7ZTA|1|16S1|U|813
7ZTA|1|16S1|A|814
7ZTA|1|16S1|A|815
7ZTA|1|16S1|A|816
7ZTA|1|16S1|C|817
7ZTA|1|16S1|G|818
7ZTA|1|16S1|A|819
7ZTA|1|16S1|U|820
7ZTA|1|16S1|G|821
*
7ZTA|1|16S1|C|879
7ZTA|1|16S1|C|880
Current chains
- Chain 16S1
- 16S ribosomal RNA
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain S081
- 30S ribosomal protein S8
- Chain S121
- 30S ribosomal protein S12
- Chain S151
- 30S ribosomal protein S15
- Chain S171
- 30S ribosomal protein S17
- Chain S211
- 30S ribosomal protein S21
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