J4_7ZTA_005

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0636

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

7ZTA|1|23S1|G|297
7ZTA|1|23S1|G|298
7ZTA|1|23S1|A|299
7ZTA|1|23S1|A|300
7ZTA|1|23S1|G|301
*
7ZTA|1|23S1|C|316
7ZTA|1|23S1|G|317
7ZTA|1|23S1|C|318
7ZTA|1|23S1|G|319
*
7ZTA|1|23S1|C|323
7ZTA|1|23S1|A|324
7ZTA|1|23S1|G|325
*
7ZTA|1|23S1|C|337
7ZTA|1|23S1|G|338
7ZTA|1|23S1|U|339
7ZTA|1|23S1|A|340
7ZTA|1|23S1|C|341

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L241

50S ribosomal protein L24