J4_7ZTA_006

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1615

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZTA|1|23S1|C|601
7ZTA|1|23S1|A|602
7ZTA|1|23S1|A|603
7ZTA|1|23S1|G|604
*
7ZTA|1|23S1|C|624
7ZTA|1|23S1|G|625
7ZTA|1|23S1|A|626
7ZTA|1|23S1|A|627
7ZTA|1|23S1|G|628
*
7ZTA|1|23S1|C|635
7ZTA|1|23S1|G|636
7ZTA|1|23S1|A|637
7ZTA|1|23S1|G|638
*
7ZTA|1|23S1|C|650
7ZTA|1|23S1|G|651
7ZTA|1|23S1|U|652
7ZTA|1|23S1|U|653
7ZTA|1|23S1|A|654
7ZTA|1|23S1|A|655
7ZTA|1|23S1|G|656

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35