J4_7ZTA_008

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

7ZTA|1|23S1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_008 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0609

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZTA|1|23S1|G|1310
7ZTA|1|23S1|G|1311
7ZTA|1|23S1|U|1312
7ZTA|1|23S1|U|1313
7ZTA|1|23S1|C|1314
*
7ZTA|1|23S1|G|1338
7ZTA|1|23S1|G|1339
7ZTA|1|23S1|U|1340
7ZTA|1|23S1|G|1341
7ZTA|1|23S1|A|1342
7ZTA|1|23S1|G|1343
*
7ZTA|1|23S1|C|1404
7ZTA|1|23S1|U|1405
*
7ZTA|1|23S1|A|1597
7ZTA|1|23S1|A|1598
7ZTA|1|23S1|U|1599
7ZTA|1|23S1|C|1600
7ZTA|1|23S1|G|1601
7ZTA|1|23S1|U|1602
7ZTA|1|23S1|A|1603
7ZTA|1|23S1|C|1604

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L231

50S ribosomal protein L23

Chain L341

50S ribosomal protein L34