J4_7ZTA_015

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

U(4SU)AA*UAG*UCUAGU*AA

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZTA_015 not in the Motif Atlas

Homologous match to J4_5HR6_001

Geometric discrepancy: 0.3838

The information below is about J4_5HR6_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

7ZTA|1|ATR1|U|7
7ZTA|1|ATR1|4SU|8
7ZTA|1|ATR1|A|9
7ZTA|1|ATR1|A|10
*
7ZTA|1|ATR1|U|22
7ZTA|1|ATR1|A|23
7ZTA|1|ATR1|G|24
*
7ZTA|1|ATR1|U|40
7ZTA|1|ATR1|C|41
7ZTA|1|ATR1|U|42
7ZTA|1|ATR1|A|43
7ZTA|1|ATR1|G|44
7ZTA|1|ATR1|U|45
*
7ZTA|1|ATR1|A|83
7ZTA|1|ATR1|A|84

Current chains

Chain ATR1

tRNA-Cys

Nearby chains

Chain 23S1

Large subunit ribosomal RNA; LSU rRNA