J4_7ZTA_016
3D structure
- PDB id
- 7ZTA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUAG*CAG*UUG(G7M)CG*CA
- Length
- 15 nucleotides
- Bulged bases
- 7ZTA|1|PTR1|U|8, 7ZTA|1|PTR1|C|48
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7ZTA_016 not in the Motif Atlas
- Homologous match to J4_7EQJ_002
- Geometric discrepancy: 0.1779
- The information below is about J4_7EQJ_002
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
7ZTA|1|PTR1|U|7
7ZTA|1|PTR1|U|8
7ZTA|1|PTR1|A|9
7ZTA|1|PTR1|G|10
*
7ZTA|1|PTR1|C|25
7ZTA|1|PTR1|A|26
7ZTA|1|PTR1|G|27
*
7ZTA|1|PTR1|U|43
7ZTA|1|PTR1|U|44
7ZTA|1|PTR1|G|45
7ZTA|1|PTR1|G7M|46
7ZTA|1|PTR1|C|48
7ZTA|1|PTR1|G|49
*
7ZTA|1|PTR1|C|65
7ZTA|1|PTR1|A|66
Current chains
- Chain PTR1
- tRNA-Lys
Nearby chains
- Chain 23S1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L161
- 50S ribosomal protein L16
- Chain S131
- 30S ribosomal protein S13
Coloring options: