3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACUAUG*UU
Length
23 nucleotides
Bulged bases
7ZW0|1|2|A|623, 7ZW0|1|2|A|1026, 7ZW0|1|2|C|1028, 7ZW0|1|2|U|1029, 7ZW0|1|2|A|1030, 7ZW0|1|2|U|1031
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7ZW0_002 not in the Motif Atlas
Homologous match to J4_8C3A_022
Geometric discrepancy: 0.0592
The information below is about J4_8C3A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.4
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7ZW0|1|2|A|622
7ZW0|1|2|A|623
7ZW0|1|2|G|624
*
7ZW0|1|2|C|975
7ZW0|1|2|G|976
7ZW0|1|2|A|977
7ZW0|1|2|A|978
7ZW0|1|2|A|979
7ZW0|1|2|G|980
*
7ZW0|1|2|C|1021
7ZW0|1|2|C|1022
7ZW0|1|2|A|1023
7ZW0|1|2|U|1024
7ZW0|1|2|A|1025
7ZW0|1|2|A|1026
7ZW0|1|2|A|1027
7ZW0|1|2|C|1028
7ZW0|1|2|U|1029
7ZW0|1|2|A|1030
7ZW0|1|2|U|1031
7ZW0|1|2|G|1032
*
7ZW0|1|2|U|1103
7ZW0|1|2|U|1104

Current chains

Chain 2
18S ribosomal RNA (RDN18-1)

Nearby chains

Chain LA
Large subunit ribosomal RNA; LSU rRNA
Chain Lq
60S ribosomal protein L41-A
Chain sX
40S ribosomal protein S11-A
Chain sY
40S ribosomal protein S13
Chain sZ
40S ribosomal protein S14-A
Chain sb
40S ribosomal protein S22-A
Chain sc
40S ribosomal protein S23-A
Chain se
40S ribosomal protein S26-A

Coloring options:


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