J4_7ZW0_004

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZW0_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.101

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|LA|C|185
7ZW0|1|LA|U|186
7ZW0|1|LA|A|187
7ZW0|1|LA|U|188
7ZW0|1|LA|G|189
*
7ZW0|1|LA|C|205
7ZW0|1|LA|G|206
7ZW0|1|LA|U|207
7ZW0|1|LA|C|208
*
7ZW0|1|LA|G|212
7ZW0|1|LA|A|213
7ZW0|1|LA|G|214
*
7ZW0|1|LA|C|226
7ZW0|1|LA|G|227
7ZW0|1|LA|U|228
7ZW0|1|LA|G|229
7ZW0|1|LA|U|230
7ZW0|1|LA|G|231

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L4-A

Chain Lb

60S ribosomal protein L26-A