J4_7ZW0_006

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGUUC*GGUUAG*CC*GGUCGUAC

Length

21 nucleotides

Bulged bases

7ZW0|1|LA|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7ZW0_006 not in the Motif Atlas

Homologous match to J4_8P9A_015

Geometric discrepancy: 0.0508

The information below is about J4_8P9A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

7ZW0|1|LA|G|1492
7ZW0|1|LA|G|1493
7ZW0|1|LA|U|1494
7ZW0|1|LA|U|1495
7ZW0|1|LA|C|1496
*
7ZW0|1|LA|G|1520
7ZW0|1|LA|G|1521
7ZW0|1|LA|U|1522
7ZW0|1|LA|U|1523
7ZW0|1|LA|A|1524
7ZW0|1|LA|G|1525
*
7ZW0|1|LA|C|1614
7ZW0|1|LA|C|1615
*
7ZW0|1|LA|G|1829
7ZW0|1|LA|G|1830
7ZW0|1|LA|U|1831
7ZW0|1|LA|C|1832
7ZW0|1|LA|G|1833
7ZW0|1|LA|U|1834
7ZW0|1|LA|A|1835
7ZW0|1|LA|C|1836

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LU

60S ribosomal protein L19-A

Chain La

60S ribosomal protein L25

Chain Lj

60S ribosomal protein L34-A

Chain Lm

60S ribosomal protein L37-A

Chain Ln

60S ribosomal protein L38

Chain Lo

60S ribosomal protein L39