J4_8A3D_004

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

8A3D|1|A|A|2366, 8A3D|1|A|U|2369, 8A3D|1|A|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8A3D|1|A|OMC|2365
8A3D|1|A|A|2366
8A3D|1|A|A|2367
8A3D|1|A|A|2368
8A3D|1|A|U|2369
8A3D|1|A|A|2370
8A3D|1|A|U|2371
*
8A3D|1|A|A|2389
8A3D|1|A|G|2390
8A3D|1|A|G|2391
*
8A3D|1|A|OMC|2824
8A3D|1|A|A|2825
8A3D|1|A|U|2826
8A3D|1|A|G|2827
8A3D|1|A|U|2828
8A3D|1|A|U|2829
*
8A3D|1|A|A|3856
8A3D|1|A|G|3857

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L17

Chain L

60S ribosomal protein L19

Chain X

60S ribosomal protein L31