J4_8A3D_009

3D structure

PDB id

8A3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(OMU)G

Length

21 nucleotides

Bulged bases

8A3D|1|A|OMU|3818

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A3D_009 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1225

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8A3D|1|A|C|3696
8A3D|1|A|U|3697
8A3D|1|A|G|3698
*
8A3D|1|A|C|3752
8A3D|1|A|G|3753
*
8A3D|1|A|C|3771
8A3D|1|A|U|3772
8A3D|1|A|U|3773
8A3D|1|A|A|3774
8A3D|1|A|A|3775
8A3D|1|A|G|3776
8A3D|1|A|G|3777
8A3D|1|A|U|3778
8A3D|1|A|A|3779
8A3D|1|A|G|3780
*
8A3D|1|A|U|3814
8A3D|1|A|G|3815
8A3D|1|A|A|3816
8A3D|1|A|A|3817
8A3D|1|A|OMU|3818
8A3D|1|A|G|3819

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L8