J4_8A3L_001

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8A3L|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A3L_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2969

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8A3L|1|A|G|115
8A3L|1|A|A|116
8A3L|1|A|G|117
8A3L|1|A|U|118
8A3L|1|A|A|119
8A3L|1|A|A|120
8A3L|1|A|U|121
8A3L|1|A|G|122
*
8A3L|1|A|U|239
8A3L|1|A|G|240
*
8A3L|1|A|C|286
8A3L|1|A|U|287
8A3L|1|A|A|288
8A3L|1|A|G|289
*
8A3L|1|A|C|311
8A3L|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17