J4_8A3L_002

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8A3L|1|A|C|183, 8A3L|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A3L_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1644

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8A3L|1|A|G|142
8A3L|1|A|A|143
8A3L|1|A|G|144
*
8A3L|1|A|C|178
8A3L|1|A|A|179
8A3L|1|A|U|180
8A3L|1|A|A|181
8A3L|1|A|A|182
8A3L|1|A|C|183
8A3L|1|A|G|184
*
8A3L|1|A|C|193
8A3L|1|A|C|194
8A3L|1|A|A|195
8A3L|1|A|A|196
8A3L|1|A|A|197
8A3L|1|A|G|198
*
8A3L|1|A|U|219
8A3L|1|A|G|220
8A3L|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20