J4_8A57_006

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8A57|1|A|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A57_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.0928

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8A57|1|A|U|1357
8A57|1|A|C|1358
*
8A57|1|A|G|1382
8A57|1|A|G|1383
8A57|1|A|U|1384
8A57|1|A|U|1385
8A57|1|A|A|1386
8A57|1|A|G|1387
*
8A57|1|A|C|1448
8A57|1|A|C|1449
*
8A57|1|A|G|1646
8A57|1|A|C|1647
8A57|1|A|C|1648
8A57|1|A|C|1649
8A57|1|A|G|1650
8A57|1|A|U|1651
8A57|1|A|A|1652

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23