J4_8A57_010

3D structure

PDB id

8A57 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGC*GAC*GGCAG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8A57_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.1861

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8A57|1|A|G|2676
8A57|1|A|A|2677
8A57|1|A|G|2678
8A57|1|A|C|2679
*
8A57|1|A|G|2707
8A57|1|A|A|2708
8A57|1|A|C|2709
*
8A57|1|A|G|2764
8A57|1|A|G|2765
8A57|1|A|C|2766
8A57|1|A|A|2767
8A57|1|A|G|2768
*
8A57|1|A|C|2802
8A57|1|A|C|2803
8A57|1|A|C|2804

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14