J4_8A5I_003
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAG*CGUAG*CGAG*CGCAUAAG
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8A5I_003 not in the Motif Atlas
- Homologous match to J4_5J7L_020
- Geometric discrepancy: 0.3722
- The information below is about J4_5J7L_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8A5I|1|A|C|644
8A5I|1|A|A|645
8A5I|1|A|A|646
8A5I|1|A|G|647
*
8A5I|1|A|C|669
8A5I|1|A|G|670
8A5I|1|A|U|671
8A5I|1|A|A|672
8A5I|1|A|G|673
*
8A5I|1|A|C|680
8A5I|1|A|G|681
8A5I|1|A|A|682
8A5I|1|A|G|683
*
8A5I|1|A|C|695
8A5I|1|A|G|696
8A5I|1|A|C|697
8A5I|1|A|A|698
8A5I|1|A|U|699
8A5I|1|A|A|700
8A5I|1|A|A|701
8A5I|1|A|G|702
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain I
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
Coloring options: