J4_8A5I_004
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAAG*CC*GAGC*GG
- Length
- 14 nucleotides
- Bulged bases
- 8A5I|1|A|G|1316, 8A5I|1|A|A|1317, 8A5I|1|A|G|1696
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8A5I_004 not in the Motif Atlas
- Homologous match to J4_4WF9_004
- Geometric discrepancy: 0.093
- The information below is about J4_4WF9_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8A5I|1|A|C|1315
8A5I|1|A|G|1316
8A5I|1|A|A|1317
8A5I|1|A|A|1318
8A5I|1|A|A|1319
8A5I|1|A|G|1320
*
8A5I|1|A|C|1338
8A5I|1|A|C|1339
*
8A5I|1|A|G|1694
8A5I|1|A|A|1695
8A5I|1|A|G|1696
8A5I|1|A|C|1697
*
8A5I|1|A|G|2042
8A5I|1|A|G|2043
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
Coloring options: