3D structure

PDB id
8AGU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state E
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
8AGU|1|f|U|2314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8AGU_007 not in the Motif Atlas
Homologous match to J4_8C3A_007
Geometric discrepancy: 0.146
The information below is about J4_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8AGU|1|f|C|2192
8AGU|1|f|U|2193
8AGU|1|f|G|2194
*
8AGU|1|f|C|2248
8AGU|1|f|G|2249
*
8AGU|1|f|C|2267
8AGU|1|f|U|2268
8AGU|1|f|U|2269
8AGU|1|f|A|2270
8AGU|1|f|A|2271
8AGU|1|f|G|2272
8AGU|1|f|G|2273
8AGU|1|f|U|2274
8AGU|1|f|A|2275
8AGU|1|f|G|2276
*
8AGU|1|f|U|2310
8AGU|1|f|G|2311
8AGU|1|f|A|2312
8AGU|1|f|A|2313
8AGU|1|f|U|2314
8AGU|1|f|G|2315

Current chains

Chain f
25S rRNA

Nearby chains

Chain j
60S ribosomal protein L2-A
Chain v
Eukaryotic translation initiation factor 5A-1
Chain y
Transfer RNA; tRNA

Coloring options:


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