J4_8AGU_010
3D structure
- PDB id
- 8AGU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast RQC complex in state E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGG*CGC*GAGGUCU*AC
- Length
- 16 nucleotides
- Bulged bases
- 8AGU|1|y|U|8, 8AGU|1|y|U|47, 8AGU|1|y|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AGU_010 not in the Motif Atlas
- Homologous match to J4_6UFG_001
- Geometric discrepancy: 0.2741
- The information below is about J4_6UFG_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8AGU|1|y|G|7
8AGU|1|y|U|8
8AGU|1|y|G|9
8AGU|1|y|G|10
*
8AGU|1|y|C|25
8AGU|1|y|G|26
8AGU|1|y|C|27
*
8AGU|1|y|G|43
8AGU|1|y|A|44
8AGU|1|y|G|45
8AGU|1|y|G|46
8AGU|1|y|U|47
8AGU|1|y|C|48
8AGU|1|y|U|49
*
8AGU|1|y|A|65
8AGU|1|y|C|66
Current chains
- Chain y
- P-site tRNA
Nearby chains
- Chain a
- RQC2 isoform 1
- Chain f
- Large subunit ribosomal RNA; LSU rRNA
- Chain r
- 60S ribosomal protein L10
Coloring options: