3D structure

PDB id
8AGV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast RQC complex in state H
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
GACUG*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8AGV_006 not in the Motif Atlas
Homologous match to J4_8P9A_017
Geometric discrepancy: 0.0533
The information below is about J4_8P9A_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78485.1
Basepair signature
cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
Number of instances in this motif group
6

Unit IDs

8AGV|1|f|G|2130
8AGV|1|f|A|2131
8AGV|1|f|C|2132
8AGV|1|f|U|2133
8AGV|1|f|G|2134
*
8AGV|1|f|C|2146
8AGV|1|f|A|2147
8AGV|1|f|U|2148
8AGV|1|f|A|2149
8AGV|1|f|G|2150
*
8AGV|1|f|U|2186
8AGV|1|f|G|2187
8AGV|1|f|A|2188
8AGV|1|f|U|2189
8AGV|1|f|U|2190
*
8AGV|1|f|A|2317
8AGV|1|f|U|2318
8AGV|1|f|U|2319
8AGV|1|f|A|2320
8AGV|1|f|A|2321
8AGV|1|f|C|2322

Current chains

Chain f
25S rRNA

Nearby chains

Chain c
60S ribosomal protein L43-A
Chain j
60S ribosomal protein L2-A

Coloring options:


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