3D structure

PDB id
8AKN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.3 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
8AKN|1|B|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8AKN_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2616
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8AKN|1|B|G|115
8AKN|1|B|A|116
8AKN|1|B|G|117
8AKN|1|B|U|118
8AKN|1|B|A|119
8AKN|1|B|A|120
8AKN|1|B|U|121
8AKN|1|B|G|122
*
8AKN|1|B|U|239
8AKN|1|B|G|240
*
8AKN|1|B|C|286
8AKN|1|B|U|287
8AKN|1|B|A|288
8AKN|1|B|G|289
*
8AKN|1|B|C|311
8AKN|1|B|C|312

Current chains

Chain B
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S16
Chain R
30S ribosomal protein S17

Coloring options:


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