J4_8AKN_002
3D structure
- PDB id
- 8AKN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 8AKN|1|B|C|183, 8AKN|1|B|A|197
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8AKN_002 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.0817
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8AKN|1|B|G|142
8AKN|1|B|A|143
8AKN|1|B|G|144
*
8AKN|1|B|C|178
8AKN|1|B|A|179
8AKN|1|B|U|180
8AKN|1|B|A|181
8AKN|1|B|A|182
8AKN|1|B|C|183
8AKN|1|B|G|184
*
8AKN|1|B|C|193
8AKN|1|B|C|194
8AKN|1|B|A|195
8AKN|1|B|A|196
8AKN|1|B|A|197
8AKN|1|B|G|198
*
8AKN|1|B|U|219
8AKN|1|B|G|220
8AKN|1|B|C|221
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain U
- 30S ribosomal protein S20
Coloring options: